Posts by Tags

Dalle and a Combinatoric Collage

5 minute read

Published: May 26, 2023

In this little project, I wanted to try out the Dalle API along with some very simple python functions for combination generation and plotting to create a semi-random collage of Dalle edits of American Gothic. I had a good time using the Dalle API and the davinci text API to put together a remixed collage of American Gothic. While coding this up, I used chatGPT to help with the plotting, which added a meta layer to the experience. Next up, I’ll play with the whisper model from OpenAI.

Latex Cover Letter Template

less than 1 minute read

Published: November 20, 2023

I’m writing a cover letter for my final paper from my PhD. I couldn’t find a latex template so I made one myself. I hope it can be useful to others.

Dalle and a Combinatoric Collage

5 minute read

Published: May 26, 2023

In this little project, I wanted to try out the Dalle API along with some very simple python functions for combination generation and plotting to create a semi-random collage of Dalle edits of American Gothic. I had a good time using the Dalle API and the davinci text API to put together a remixed collage of American Gothic. While coding this up, I used chatGPT to help with the plotting, which added a meta layer to the experience. Next up, I’ll play with the whisper model from OpenAI.

LLMs and Antibodies

6 minute read

Published: March 04, 2023

motivation

I wanted to understand if LLM / PLMs can be useful for analyzing antibody sequence data. Antibodies are proteins made by the immune system which are critical for protection against viruses. Here I used antibody sequencing data, AbLang (Antibody LLM), and single-cell rna sequencing data investigate.

Latex Cover Letter Template

less than 1 minute read

Published: November 20, 2023

I’m writing a cover letter for my final paper from my PhD. I couldn’t find a latex template so I made one myself. I hope it can be useful to others.

LLMs and Antibodies

6 minute read

Published: March 04, 2023

motivation

I wanted to understand if LLM / PLMs can be useful for analyzing antibody sequence data. Antibodies are proteins made by the immune system which are critical for protection against viruses. Here I used antibody sequencing data, AbLang (Antibody LLM), and single-cell rna sequencing data investigate.

LLMs and Antibodies

6 minute read

Published: March 04, 2023

motivation

I wanted to understand if LLM / PLMs can be useful for analyzing antibody sequence data. Antibodies are proteins made by the immune system which are critical for protection against viruses. Here I used antibody sequencing data, AbLang (Antibody LLM), and single-cell rna sequencing data investigate.

Latex Cover Letter Template

less than 1 minute read

Published: November 20, 2023

I’m writing a cover letter for my final paper from my PhD. I couldn’t find a latex template so I made one myself. I hope it can be useful to others.

RNA Obelisks

5 minute read

Published: March 11, 2024

novel viroid-like entities revealed by computational biology

These authors would write this paper, and I mean that in the good way. We have Andy Fire, who is famous for a deeply thoughtful career in RNA biology. We have Ami Bhatt: a world-class researcher who leads a group that generates and interprets micro-biome sequencing data. We also have the participation of Robert C. Edgar on the paper — he is, as far as I am aware, the only “independent researcher” in biology that is respected. His open-source software MUSCLES its way into many a phylogenetic analysis. Plus I like his style:

this is the platonic case of a dude who got rich by selling a tech company in the late 90s

Dalle and a Combinatoric Collage

5 minute read

Published: May 26, 2023

In this little project, I wanted to try out the Dalle API along with some very simple python functions for combination generation and plotting to create a semi-random collage of Dalle edits of American Gothic. I had a good time using the Dalle API and the davinci text API to put together a remixed collage of American Gothic. While coding this up, I used chatGPT to help with the plotting, which added a meta layer to the experience. Next up, I’ll play with the whisper model from OpenAI.